1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.00000000000008:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD26A54R_RS16380
Histidine kinase, Classic
Clostridioides difficile CD26A54_R · GCF_001484885
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_001484885#CD26A54R_RS16380Stable P2CS identifier used across views.
GenomeGCF_001484885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:4.62e-25:368:110:109- Raw architecture: HisKA:148:0.00000000000008:211:64:64#HATPase_c:260:4.62e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_001484885::NZ_AMDM01000004.1::G00053
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span1496112-1501837Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001484885::NZ_AMDM01000004.1::G00053Context members
CD26A54R_RS16380CD26A54R_RS16385CD26A54R_RS16390CD26A54R_RS16395CD26A54R_RS16400
Partner locus tags
CD26A54R_RS16380CD26A54R_RS16385CD26A54R_RS16390CD26A54R_RS16395CD26A54R_RS16400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891726.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74R1N1Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74R1N1_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD26A54R_RS16380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AMDM01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 496 112-1 497 227 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 496 112-1 501 837 ntGCF_001484885::NZ_AMDM01000004.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001484885::NZ_AMDM01000004.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AMDM01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 496 112-1 501 837 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 496 112 nt1 501 837 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
CD26A54R_RS16380GCF_001484885#CD26A54R_RS16380
HKClassicCurrent focus
1 496 112-1 497 227 nt · Reverse (-)
CD26A54R_RS16385GCF_001484885#CD26A54R_RS16385
RROmpR
1 497 263-1 497 961 nt · Reverse (-)
CD26A54R_RS16390GCF_001484885#CD26A54R_RS16390
RROmpR
1 498 343-1 499 023 nt · Reverse (-)
CD26A54R_RS16395GCF_001484885#CD26A54R_RS16395
HKClassic
1 499 073-1 501 088 nt · Reverse (-)
CD26A54R_RS16400GCF_001484885#CD26A54R_RS16400
RROmpR
1 501 160-1 501 837 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216515Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2676088
Simplified PFAM architecture for HKOC_2676088
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2676088
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 222 030 · GCF_001484885
AssemblyCD26a54Rv1.0 · Contighaploid
Genome composition4 146 282 bp · 28,5% GCClostridioides difficile CD26A54_R
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key