1 HisKA#1
199-256 aa · 58 aa · 14.2% of protein
Raw token
HisKA:199:0.00000000000286:256:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M2E15_RS00840
Histidine kinase, Classic
Bacillus mycoides · GCF_001484805
ClassHKTypeClassicLength408 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001484805#M2E15_RS00840Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length408 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 408 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
302-406 aa · 105 aa · 25.7% of protein
Raw token
HATPase_c:302:1.05e-25:406:108:109- Raw architecture: HisKA:199:0.00000000000286:256:58:64#HATPase_c:302:1.05e-25:406:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001484805::NZ_LLWA01000004.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span45032-46258Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM2E15_4860RefSeq proteinWP_059037268.1
Context group ID
GCF_001484805::NZ_LLWA01000004.1::G00055Context members
M2E15_RS00840
Partner locus tags
M2E15_RS00840
Partner old locus tags
M2E15_4860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_059037268.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM2E15_RS00840Primary locus identifier stored in the genes table.
Old locus tagM2E15_4860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LLWA01000004.1Sequence record reported by the local genomic context database.
Genomic interval45 032-46 258 nt1 227 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 032-46 258 ntGCF_001484805::NZ_LLWA01000004.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001484805::NZ_LLWA01000004.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LLWA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span45 032-46 258 nt1 227 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 032 nt46 258 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M2E15_RS00840GCF_001484805#M2E15_RS00840
HKClassicCurrent focus
45 032-46 258 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001484805#M2E15_RS00840The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2371973
Simplified PFAM architecture for HKOC_2371973
PFAM domain coverage: 326 / 408 aa (79.9%)
1 aa408 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-172] | HisKA[200-256] | HATPase_c[302-407]
- Domain count: 3
- Matched identifier: HKOC_2371973
- Positioned domains: MASE12 10-172 ; HisKA 200-256 ; HATPase_c 302-407
Cluster members and taxonomy
Representative gene: GCF_001484805#M2E15_RS00840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001484805
AssemblyM2E_15 · Scaffoldhaploid
Genome composition6 077 838 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key