Gene detail

ADP75_RS00300

Histidine kinase, Classic

Francisella tularensis · GCF_001412545

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength893 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_001412545#ADP75_RS00300Stable P2CS identifier used across views.

GenomeGCF_001412545Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterHKOC_0424190Run 6 · 4 sequences · id 100% · cov 80% · representative

External referencesWP_057113005.1 · MIST4 ADP75_RS00300RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

KdpDHisKAHATPase_c

Protein length893 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage388 / 893 aa (43.4%)Merged over positioned domains only.

Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa893 aa

Domain-by-domain annotation3 items

1 KdpD#1

21-230 aa · 210 aa · 23.5% of protein

Raw tokenKdpD:21:1.08e-117:230:210:210

2 HisKA#2

668-732 aa · 65 aa · 7.3% of protein

Raw tokenHisKA:668:0.000000000000498:732:65:64

3 HATPase_c#3

777-889 aa · 113 aa · 12.7% of protein

Raw tokenHATPase_c:777:3.95e-27:889:113:109

Raw architecture: KdpD:21:1.08e-117:230:210:210#HisKA:668:0.000000000000498:732:65:64#HATPase_c:777:3.95e-27:889:113:109
Domain description: 1 KdpD,1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_001412545::NZ_CP012092.1::G00001

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span63581-66262Genomic interval covered by the local TCS group.

Identifiers

Old locus tagADP75_00300RefSeq proteinWP_057113005.1

Context group IDGCF_001412545::NZ_CP012092.1::G00001

Context members

ADP75_RS00300

Partner locus tags

ADP75_RS00300

Partner old locus tags

ADP75_00300

Partner protein IDs

WP_057113005.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_057113005.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagADP75_RS00300Primary locus identifier stored in the genes table.

Old locus tagADP75_00300Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP012092.1Sequence record reported by the local genomic context database.

Genomic interval63 581-66 262 nt2 682 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span63 581-66 262 ntGCF_001412545::NZ_CP012092.1::G00001

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_001412545::NZ_CP012092.1::G00001

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP012092.1All displayed genes belong to this local TCS context.

Neighborhood span63 581-66 262 nt2 682 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

63 581 nt66 262 nt

+-ADP75_RS00300

Neighborhood gene cards

1 gene in the current local neighborhood.

ADP75_RS00300GCF_001412545#ADP75_RS00300

HKClassicCurrent focus

63 581-66 262 nt · Reverse (-)

Old locus ADP75_00300RefSeq WP_057113005.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0424190HK

Run 64 sequencesid 100%cov 80%

PFAM KdpD + DUF4118 + HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_0424190Run 6 · HK · 4 sequences

Representative sequenceGCF_001412545#ADP75_RS00300The current gene is the representative for this cluster.

PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0424190

Simplified PFAM architecture for HKOC_0424190

PFAM domain coverage: 488 / 893 aa (54.6%)

1 aa893 aa

KdpDDUF4118HisKAHATPase_c

Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
Raw architecture: KdpD[21-230] | DUF4118[406-503] | HisKA[666-732] | HATPase_c[777-889]
Domain count: 4
Matched identifier: HKOC_0424190
Positioned domains: KdpD 21-230 ; DUF4118 406-503 ; HisKA 666-732 ; HATPase_c 777-889

Cluster members and taxonomy

Representative gene: GCF_001412545#ADP75_RS00300

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 263 · GCF_001412545

AssemblyASM141254v1 · Chromosomehaploid

Genome composition1 899 676 bp · 32,0% GCFrancisella tularensis

Signal transduction countsGenes 3 · HK 2 · RR 1CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search HK genes NCBI assembly files

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