1 Response_reg#1
4-112 aa · 109 aa · 47.0% of protein
Raw token
Response_reg:4:2.19e-23:112:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA00_RS08740
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_001406655
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406655#ARA00_RS08740Stable P2CS identifier used across views.
GenomeGCF_001406655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 232 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-224 aa · 85 aa · 36.6% of protein
Raw token
LytTR:140:0.00000000000000818:224:90:98- Raw architecture: Response_reg:4:2.19e-23:112:115:111#LytTR:140:0.00000000000000818:224:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406655::NZ_CYZG01000007.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span113217-113915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852409_01790RefSeq proteinWP_004842839.1
Context group ID
GCF_001406655::NZ_CYZG01000007.1::G00022Context members
ARA00_RS08740
Partner locus tags
ARA00_RS08740
Partner old locus tags
ERS852409_01790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004842839.1Primary protein accession used for annex mappings.
UniProt accessionA7B2S4Primary UniProt accession resolved in the annex database.
UniProt IDA7B2S4_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA00_RS08740Primary locus identifier stored in the genes table.
Old locus tagERS852409_01790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZG01000007.1Sequence record reported by the local genomic context database.
Genomic interval113 217-113 915 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 217-113 915 ntGCF_001406655::NZ_CYZG01000007.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406655::NZ_CYZG01000007.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZG01000007.1All displayed genes belong to this local TCS context.
Neighborhood span113 217-113 915 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 217 nt113 915 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA00_RS08740GCF_001406655#ARA00_RS08740
RRLytTRCurrent focus
113 217-113 915 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS08110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119882
Simplified PFAM architecture for RROC_1119882
PFAM domain coverage: 193 / 232 aa (83.2%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-111] | LytTR[140-224]
- Domain count: 2
- Matched identifier: RROC_1119882
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; LytTR 140-224 ; LytTR 140-224
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS08110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_001406655
Assembly13414_6#36 · Scaffoldhaploid
Genome composition3 109 807 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 37 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key