1 HAMP#1
150-221 aa · 72 aa · 15.8% of protein
Raw token
HAMP:150:0.000000821:221:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA00_RS04790
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_001406655
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406655#ARA00_RS04790Stable P2CS identifier used across views.
GenomeGCF_001406655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 457 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-291 aa · 60 aa · 13.1% of protein
Raw token
HisKA:232:0.000000166:291:60:643 HATPase_c#3
343-450 aa · 108 aa · 23.6% of protein
Raw token
HATPase_c:343:4.78e-17:450:108:109- Raw architecture: HAMP:150:0.000000821:221:72:69#HisKA:232:0.000000166:291:60:64#HATPase_c:343:4.78e-17:450:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406655::NZ_CYZG01000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219065-221088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852409_00977RefSeq proteinWP_055168621.1
Context group ID
GCF_001406655::NZ_CYZG01000003.1::G00013Context members
ARA00_RS04790ARA00_RS04795
Partner locus tags
ARA00_RS04790ARA00_RS04795
Partner old locus tags
ERS852409_00977ERS852409_00978
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055168621.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA00_RS04790Primary locus identifier stored in the genes table.
Old locus tagERS852409_00977Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZG01000003.1Sequence record reported by the local genomic context database.
Genomic interval219 065-220 438 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 065-221 088 ntGCF_001406655::NZ_CYZG01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406655::NZ_CYZG01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span219 065-221 088 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 065 nt221 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA00_RS04790GCF_001406655#ARA00_RS04790
HKClassicCurrent focus
219 065-220 438 nt · Reverse (-)
ARA00_RS04795GCF_001406655#ARA00_RS04795
RROmpR
220 429-221 088 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS04790The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1875212
Simplified PFAM architecture for HKOC_1875212
PFAM domain coverage: 161 / 457 aa (35.2%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-285] | HATPase_c[344-451]
- Domain count: 2
- Matched identifier: HKOC_1875212
- Positioned domains: HisKA 233-285 ; HATPase_c 344-451
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS04790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_001406655
Assembly13414_6#36 · Scaffoldhaploid
Genome composition3 109 807 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 37 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key