1 HisKA#1
112-177 aa · 66 aa · 20.1% of protein
Raw token
HisKA:112:0.000000000911:177:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS07335
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeClassicLength329 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS07335Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length329 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 329 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa329 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
222-328 aa · 107 aa · 32.5% of protein
Raw token
HATPase_c:222:6.54e-27:328:108:109- Raw architecture: HisKA:112:0.000000000911:177:66:64#HATPase_c:222:6.54e-27:328:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000018.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span373-2035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_01500RefSeq proteinWP_003499299.1
Context group ID
GCF_001406475::NZ_CYZY01000018.1::G00021Context members
ARA57_RS07330ARA57_RS07335
Partner locus tags
ARA57_RS07330ARA57_RS07335
Partner old locus tags
ERS852479_01499ERS852479_01500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003499299.1Primary protein accession used for annex mappings.
UniProt accessionE7GJP7Primary UniProt accession resolved in the annex database.
UniProt IDE7GJP7_CLOS6Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS07335Primary locus identifier stored in the genes table.
Old locus tagERS852479_01500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000018.1Sequence record reported by the local genomic context database.
Genomic interval1 046-2 035 nt990 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span373-2 035 ntGCF_001406475::NZ_CYZY01000018.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000018.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000018.1All displayed genes belong to this local TCS context.
Neighborhood span373-2 035 nt1 663 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
373 nt2 035 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS07330GCF_001406475#ARA57_RS07330
RROmpR
373-1 056 nt · Forward (+)
ARA57_RS07335GCF_001406475#ARA57_RS07335
HKClassicCurrent focus
1 046-2 035 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS05895Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2857964
Simplified PFAM architecture for HKOC_2857964
PFAM domain coverage: 171 / 329 aa (52.0%)
1 aa329 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[114-177] | HATPase_c[222-328]
- Domain count: 2
- Matched identifier: HKOC_2857964
- Positioned domains: HisKA 114-177 ; HATPase_c 222-328
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS05895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key