1 Response_reg#1
5-127 aa · 123 aa · 51.2% of protein
Raw token
Response_reg:5:1.01e-21:127:123:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS05975
Response regulator OmpR family
[Clostridium] symbiosum · GCF_001406475
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS05975Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 240 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-234 aa · 74 aa · 30.8% of protein
Raw token
Trans_reg_C:161:4.14e-36:234:77:77- Raw architecture: Response_reg:5:1.01e-21:127:123:111#Trans_reg_C:161:4.14e-36:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000013.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38253-40500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_01216RefSeq proteinWP_003499669.1
Context group ID
GCF_001406475::NZ_CYZY01000013.1::G00017Context members
ARA57_RS05975ARA57_RS05980
Partner locus tags
ARA57_RS05975ARA57_RS05980
Partner old locus tags
ERS852479_01216ERS852479_01217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003499669.1Primary protein accession used for annex mappings.
UniProt accessionE7GK80Primary UniProt accession resolved in the annex database.
UniProt IDE7GK80_CLOS6Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS05975Primary locus identifier stored in the genes table.
Old locus tagERS852479_01216Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000013.1Sequence record reported by the local genomic context database.
Genomic interval38 253-38 975 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 253-40 500 ntGCF_001406475::NZ_CYZY01000013.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000013.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000013.1All displayed genes belong to this local TCS context.
Neighborhood span38 253-40 500 nt2 248 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 253 nt40 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS05975GCF_001406475#ARA57_RS05975
RROmpRCurrent focus
38 253-38 975 nt · Forward (+)
ARA57_RS05980GCF_001406475#ARA57_RS05980
HKClassic
39 100-40 500 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS06825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882383
Simplified PFAM architecture for RROC_0882383
PFAM domain coverage: 196 / 240 aa (81.7%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-126] | Trans_reg_C[161-234]
- Domain count: 2
- Matched identifier: RROC_0882383
- Positioned domains: Response_reg 5-126 ; Response_reg 5-126 ; Trans_reg_C 161-234 ; Trans_reg_C 161-234
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS06825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key