1 Response_reg#1
4-121 aa · 118 aa · 49.8% of protein
Raw token
Response_reg:4:3.3e-19:121:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS05905
Response regulator LytTR family
[Clostridium] symbiosum · GCF_001406475
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406475#ARA57_RS05905Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 237 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-230 aa · 88 aa · 37.1% of protein
Raw token
LytTR:143:7.72e-22:230:93:98- Raw architecture: Response_reg:4:3.3e-19:121:120:111#LytTR:143:7.72e-22:230:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406475::NZ_CYZY01000013.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22417-23130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_01200RefSeq proteinWP_009298147.1
Context group ID
GCF_001406475::NZ_CYZY01000013.1::G00016Context members
ARA57_RS05905
Partner locus tags
ARA57_RS05905
Partner old locus tags
ERS852479_01200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009298147.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS05905Primary locus identifier stored in the genes table.
Old locus tagERS852479_01200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000013.1Sequence record reported by the local genomic context database.
Genomic interval22 417-23 130 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 417-23 130 ntGCF_001406475::NZ_CYZY01000013.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000013.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000013.1All displayed genes belong to this local TCS context.
Neighborhood span22 417-23 130 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 417 nt23 130 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA57_RS05905GCF_001406475#ARA57_RS05905
RRLytTRCurrent focus
22 417-23 130 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS05905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964718
Simplified PFAM architecture for RROC_0964718
PFAM domain coverage: 195 / 237 aa (82.3%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[143-230]
- Domain count: 2
- Matched identifier: RROC_0964718
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 143-230 ; LytTR 143-230
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS05905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key