1 HisKA#1
341-406 aa · 66 aa · 9.0% of protein
Raw token
HisKA:341:4.24e-17:406:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS05640
Histidine kinase, Hybrid
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeHybridLength730 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406475#ARA57_RS05640Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length730 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 730 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa730 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-571 aa · 118 aa · 16.2% of protein
Raw token
HATPase_c:454:8e-32:571:118:1093 Response_reg#3
605-721 aa · 117 aa · 16.0% of protein
Raw token
Response_reg:605:2.63e-28:721:117:111- Raw architecture: HisKA:341:4.24e-17:406:66:64#HATPase_c:454:8e-32:571:118:109#Response_reg:605:2.63e-28:721:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406475::NZ_CYZY01000012.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46187-48379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_01144RefSeq proteinWP_242858223.1
Context group ID
GCF_001406475::NZ_CYZY01000012.1::G00015Context members
ARA57_RS05640
Partner locus tags
ARA57_RS05640
Partner old locus tags
ERS852479_01144
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242858223.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS05640Primary locus identifier stored in the genes table.
Old locus tagERS852479_01144Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000012.1Sequence record reported by the local genomic context database.
Genomic interval46 187-48 379 nt2 193 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 187-48 379 ntGCF_001406475::NZ_CYZY01000012.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000012.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000012.1All displayed genes belong to this local TCS context.
Neighborhood span46 187-48 379 nt2 193 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 187 nt48 379 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA57_RS05640GCF_001406475#ARA57_RS05640
HKHybridCurrent focus
46 187-48 379 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS05640The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0712327
Simplified PFAM architecture for HKOC_0712327
PFAM domain coverage: 300 / 730 aa (41.1%)
1 aa730 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-406] | HATPase_c[454-571] | Response_reg[605-720]
- Domain count: 3
- Matched identifier: HKOC_0712327
- Positioned domains: HisKA 341-406 ; HATPase_c 454-571 ; Response_reg 605-720
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS05640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key