1 CheW#1
20-156 aa · 137 aa · 44.5% of protein
Raw token
CheW:20:2.39e-28:156:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS03505
Response regulator CheV family
[Clostridium] symbiosum · GCF_001406475
ClassRRTypeCheVLength308 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406475#ARA57_RS03505Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage255 / 308 aa (82.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 Response_reg#2
180-297 aa · 118 aa · 38.3% of protein
Raw token
Response_reg:180:5.79e-24:297:119:111- Raw architecture: CheW:20:2.39e-28:156:138:138#Response_reg:180:5.79e-24:297:119:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406475::NZ_CYZY01000007.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66531-67457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00712RefSeq proteinWP_055175263.1
Context group ID
GCF_001406475::NZ_CYZY01000007.1::G00011Context members
ARA57_RS03505
Partner locus tags
ARA57_RS03505
Partner old locus tags
ERS852479_00712
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055175263.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS03505Primary locus identifier stored in the genes table.
Old locus tagERS852479_00712Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000007.1Sequence record reported by the local genomic context database.
Genomic interval66 531-67 457 nt927 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 531-67 457 ntGCF_001406475::NZ_CYZY01000007.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000007.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000007.1All displayed genes belong to this local TCS context.
Neighborhood span66 531-67 457 nt927 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 531 nt67 457 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA57_RS03505GCF_001406475#ARA57_RS03505
RRCheVCurrent focus
66 531-67 457 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS03505The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0557699
Simplified PFAM architecture for RROC_0557699
PFAM domain coverage: 250 / 308 aa (81.2%)
1 aa308 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[20-154] | Response_reg[180-294]
- Domain count: 2
- Matched identifier: RROC_0557699
- Positioned domains: CheW 20-154 ; CheW 20-154 ; Response_reg 180-294 ; Response_reg 180-294
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS03505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key