1 HAMP#1
238-305 aa · 68 aa · 12.8% of protein
Raw token
HAMP:238:0.0000000000213:305:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS02600
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeClassicLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS02600Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 531 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 His_kinase#2
322-401 aa · 80 aa · 15.1% of protein
Raw token
His_kinase:322:8.54e-33:401:80:803 HATPase_c#3
413-525 aa · 113 aa · 21.3% of protein
Raw token
HATPase_c:413:0.0000000000000274:525:114:109- Raw architecture: HAMP:238:0.0000000000213:305:68:69#His_kinase:322:8.54e-33:401:80:80#HATPase_c:413:0.0000000000000274:525:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000005.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83879-86582Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00529RefSeq proteinWP_003509531.1
Context group ID
GCF_001406475::NZ_CYZY01000005.1::G00008Context members
ARA57_RS02595ARA57_RS02600
Partner locus tags
ARA57_RS02595ARA57_RS02600
Partner old locus tags
ERS852479_00528ERS852479_00529
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003509531.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS02600Primary locus identifier stored in the genes table.
Old locus tagERS852479_00529Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000005.1Sequence record reported by the local genomic context database.
Genomic interval84 987-86 582 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 879-86 582 ntGCF_001406475::NZ_CYZY01000005.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000005.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000005.1All displayed genes belong to this local TCS context.
Neighborhood span83 879-86 582 nt2 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 879 nt86 582 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS02595GCF_001406475#ARA57_RS02595
RRunclassified
83 879-84 997 nt · Forward (+)
ARA57_RS02600GCF_001406475#ARA57_RS02600
HKClassicCurrent focus
84 987-86 582 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS14810Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1351636
Simplified PFAM architecture for HKOC_1351636
PFAM domain coverage: 240 / 531 aa (45.2%)
1 aa531 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[256-305] | His_kinase[322-399] | HATPase_c[414-525]
- Domain count: 3
- Matched identifier: HKOC_1351636
- Positioned domains: HAMP 256-305 ; His_kinase 322-399 ; HATPase_c 414-525
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS14810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key