1 HAMP#1
61-127 aa · 67 aa · 19.4% of protein
Raw token
HAMP:61:0.0000000127:127:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS01940
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS01940Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage214 / 346 aa (61.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation3 items
2 HisKA#2
143-198 aa · 56 aa · 16.2% of protein
Raw token
HisKA:143:0.0000000381:198:56:643 HATPase_c#3
255-345 aa · 91 aa · 26.3% of protein
Raw token
HATPase_c:255:0.00000314:345:109:109- Raw architecture: HAMP:61:0.0000000127:127:67:69#HisKA:143:0.0000000381:198:56:64#HATPase_c:255:0.00000314:345:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000004.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49170-50910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00393RefSeq proteinWP_055174824.1
Context group ID
GCF_001406475::NZ_CYZY01000004.1::G00005Context members
ARA57_RS01935ARA57_RS01940
Partner locus tags
ARA57_RS01935ARA57_RS01940
Partner old locus tags
ERS852479_00392ERS852479_00393
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055174824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS01940Primary locus identifier stored in the genes table.
Old locus tagERS852479_00393Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000004.1Sequence record reported by the local genomic context database.
Genomic interval49 870-50 910 nt1 041 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 170-50 910 ntGCF_001406475::NZ_CYZY01000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000004.1All displayed genes belong to this local TCS context.
Neighborhood span49 170-50 910 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 170 nt50 910 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS01935GCF_001406475#ARA57_RS01935
RROmpR
49 170-49 877 nt · Forward (+)
ARA57_RS01940GCF_001406475#ARA57_RS01940
HKClassicCurrent focus
49 870-50 910 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS01940The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2815794
Simplified PFAM architecture for HKOC_2815794
PFAM domain coverage: 97 / 346 aa (28.0%)
1 aa346 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[86-126] | HisKA[143-198]
- Domain count: 2
- Matched identifier: HKOC_2815794
- Positioned domains: HAMP 86-126 ; HisKA 143-198
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS01940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key