1 Response_reg#1
10-118 aa · 109 aa · 46.4% of protein
Raw token
Response_reg:10:2.7e-32:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS01935
Response regulator OmpR family
[Clostridium] symbiosum · GCF_001406475
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS01935Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 235 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-232 aa · 73 aa · 31.1% of protein
Raw token
Trans_reg_C:160:1.26e-29:232:73:77- Raw architecture: Response_reg:10:2.7e-32:118:111:111#Trans_reg_C:160:1.26e-29:232:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000004.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49170-50910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00392RefSeq proteinWP_055174819.1
Context group ID
GCF_001406475::NZ_CYZY01000004.1::G00005Context members
ARA57_RS01935ARA57_RS01940
Partner locus tags
ARA57_RS01935ARA57_RS01940
Partner old locus tags
ERS852479_00392ERS852479_00393
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055174819.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS01935Primary locus identifier stored in the genes table.
Old locus tagERS852479_00392Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000004.1Sequence record reported by the local genomic context database.
Genomic interval49 170-49 877 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 170-50 910 ntGCF_001406475::NZ_CYZY01000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000004.1All displayed genes belong to this local TCS context.
Neighborhood span49 170-50 910 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 170 nt50 910 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS01935GCF_001406475#ARA57_RS01935
RROmpRCurrent focus
49 170-49 877 nt · Forward (+)
ARA57_RS01940GCF_001406475#ARA57_RS01940
HKClassic
49 870-50 910 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS01935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1020309
Simplified PFAM architecture for RROC_1020309
PFAM domain coverage: 182 / 235 aa (77.4%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-117] | Trans_reg_C[160-233]
- Domain count: 2
- Matched identifier: RROC_1020309
- Positioned domains: Response_reg 10-117 ; Response_reg 10-117 ; Trans_reg_C 160-233 ; Trans_reg_C 160-233
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS01935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key