1 HAMP#1
153-220 aa · 68 aa · 15.6% of protein
Raw token
HAMP:153:0.000000189:220:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA57_RS00565
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_001406475
ClassHKTypeClassicLength437 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406475#ARA57_RS00565Stable P2CS identifier used across views.
GenomeGCF_001406475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length437 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage208 / 437 aa (47.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa437 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-291 aa · 60 aa · 13.7% of protein
Raw token
HisKA:232:0.000000000542:291:60:643 HATPase_c#3
345-424 aa · 80 aa · 18.3% of protein
Raw token
HATPase_c:345:0.0000275:424:97:109- Raw architecture: HAMP:153:0.000000189:220:68:69#HisKA:232:0.000000000542:291:60:64#HATPase_c:345:0.0000275:424:97:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406475::NZ_CYZY01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124108-126131Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852479_00111RefSeq proteinWP_003508006.1
Context group ID
GCF_001406475::NZ_CYZY01000001.1::G00003Context members
ARA57_RS00560ARA57_RS00565
Partner locus tags
ARA57_RS00560ARA57_RS00565
Partner old locus tags
ERS852479_00110ERS852479_00111
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003508006.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AS97Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AS97_CLOSYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA57_RS00565Primary locus identifier stored in the genes table.
Old locus tagERS852479_00111Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZY01000001.1Sequence record reported by the local genomic context database.
Genomic interval124 818-126 131 nt1 314 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span124 108-126 131 ntGCF_001406475::NZ_CYZY01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406475::NZ_CYZY01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span124 108-126 131 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 108 nt126 131 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA57_RS00560GCF_001406475#ARA57_RS00560
RROmpR
124 108-124 818 nt · Forward (+)
ARA57_RS00565GCF_001406475#ARA57_RS00565
HKClassicCurrent focus
124 818-126 131 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS08195Use this link to inspect the representative gene detail.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2015346
Simplified PFAM architecture for HKOC_2015346
PFAM domain coverage: 57 / 446 aa (12.8%)
1 aa446 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[243-299]
- Domain count: 1
- Matched identifier: HKOC_2015346
- Positioned domains: HisKA 243-299
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS08195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_001406475
Assembly13470_2#83 · Scaffoldhaploid
Genome composition4 727 130 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 99 · HK 47 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key