1 HAMP#1
298-367 aa · 70 aa · 11.9% of protein
Raw token
HAMP:298:0.0000000191:367:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS11965
Histidine kinase, Classic
Eubacterium ramulus · GCF_001406295
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS11965Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 589 aa (43.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:382:3.69e-28:461:80:803 HATPase_c#3
479-581 aa · 103 aa · 17.5% of protein
Raw token
HATPase_c:479:1.55e-16:581:110:109- Raw architecture: HAMP:298:0.0000000191:367:70:69#His_kinase:382:3.69e-28:461:80:80#HATPase_c:479:1.55e-16:581:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000020.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16247-19541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_02447RefSeq proteinWP_055290689.1
Context group ID
GCF_001406295::NZ_CYYA01000020.1::G00030Context members
ARA08_RS11965ARA08_RS11970
Partner locus tags
ARA08_RS11965ARA08_RS11970
Partner old locus tags
ERS852448_02447ERS852448_02448
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290689.1Primary protein accession used for annex mappings.
UniProt accessionA0A173V1V5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173V1V5_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS11965Primary locus identifier stored in the genes table.
Old locus tagERS852448_02447Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000020.1Sequence record reported by the local genomic context database.
Genomic interval16 247-18 016 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 247-19 541 ntGCF_001406295::NZ_CYYA01000020.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000020.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000020.1All displayed genes belong to this local TCS context.
Neighborhood span16 247-19 541 nt3 295 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 247 nt19 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS11965GCF_001406295#ARA08_RS11965
HKClassicCurrent focus
16 247-18 016 nt · Reverse (-)
ARA08_RS11970GCF_001406295#ARA08_RS11970
RRunclassified
17 994-19 541 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS11965The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115312
Simplified PFAM architecture for HKOC_1115312
PFAM domain coverage: 182 / 589 aa (30.9%)
1 aa589 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[382-461] | HATPase_c[480-581]
- Domain count: 2
- Matched identifier: HKOC_1115312
- Positioned domains: His_kinase 382-461 ; HATPase_c 480-581
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS11965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key