1 Response_reg#1
5-115 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:5:8.18e-36:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS10335
Response regulator OmpR family
Eubacterium ramulus · GCF_001406295
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406295#ARA08_RS10335Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-232 aa · 75 aa · 31.9% of protein
Raw token
Trans_reg_C:158:2.23e-32:232:75:77- Raw architecture: Response_reg:5:8.18e-36:115:112:111#Trans_reg_C:158:2.23e-32:232:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406295::NZ_CYYA01000014.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79251-79958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_02112RefSeq proteinWP_021740355.1
Context group ID
GCF_001406295::NZ_CYYA01000014.1::G00026Context members
ARA08_RS10335
Partner locus tags
ARA08_RS10335
Partner old locus tags
ERS852448_02112
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021740355.1Primary protein accession used for annex mappings.
UniProt accessionU2QXZ0Primary UniProt accession resolved in the annex database.
UniProt IDU2QXZ0_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS10335Primary locus identifier stored in the genes table.
Old locus tagERS852448_02112Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000014.1Sequence record reported by the local genomic context database.
Genomic interval79 251-79 958 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 251-79 958 ntGCF_001406295::NZ_CYYA01000014.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000014.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000014.1All displayed genes belong to this local TCS context.
Neighborhood span79 251-79 958 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 251 nt79 958 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA08_RS10335GCF_001406295#ARA08_RS10335
RROmpRCurrent focus
79 251-79 958 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS13690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018325
Simplified PFAM architecture for RROC_1018325
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[160-233]
- Domain count: 2
- Matched identifier: RROC_1018325
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 160-233 ; Trans_reg_C 160-233
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS13690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key