1 HAMP#1
80-148 aa · 69 aa · 18.3% of protein
Raw token
HAMP:80:0.0000000202:148:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS08705
Histidine kinase, Classic
Eubacterium ramulus · GCF_001406295
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS08705Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 377 aa (62.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-228 aa · 68 aa · 18.0% of protein
Raw token
HisKA:161:0.0000000235:228:68:643 HATPase_c#3
278-375 aa · 98 aa · 26.0% of protein
Raw token
HATPase_c:278:5.5e-18:375:101:109- Raw architecture: HAMP:80:0.0000000202:148:69:69#HisKA:161:0.0000000235:228:68:64#HATPase_c:278:5.5e-18:375:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000011.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44493-46288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_01776RefSeq proteinWP_055290343.1
Context group ID
GCF_001406295::NZ_CYYA01000011.1::G00019Context members
ARA08_RS08705ARA08_RS08710
Partner locus tags
ARA08_RS08705ARA08_RS08710
Partner old locus tags
ERS852448_01776ERS852448_01777
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290343.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TZL1Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TZL1_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS08705Primary locus identifier stored in the genes table.
Old locus tagERS852448_01776Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000011.1Sequence record reported by the local genomic context database.
Genomic interval44 493-45 626 nt1 134 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 493-46 288 ntGCF_001406295::NZ_CYYA01000011.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000011.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000011.1All displayed genes belong to this local TCS context.
Neighborhood span44 493-46 288 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 493 nt46 288 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS08705GCF_001406295#ARA08_RS08705
HKClassicCurrent focus
44 493-45 626 nt · Reverse (-)
ARA08_RS08710GCF_001406295#ARA08_RS08710
RROmpR
45 614-46 288 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS08705The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634769
Simplified PFAM architecture for HKOC_2634769
PFAM domain coverage: 203 / 377 aa (53.8%)
1 aa377 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-149] | HisKA[162-227] | HATPase_c[276-367]
- Domain count: 3
- Matched identifier: HKOC_2634769
- Positioned domains: HAMP 105-149 ; HisKA 162-227 ; HATPase_c 276-367
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS08705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key