1 SBP_bac_3#1
33-249 aa · 217 aa · 22.9% of protein
Raw token
SBP_bac_3:33:5.4e-27:249:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS08055
Histidine kinase, Hybrid
Eubacterium ramulus · GCF_001406295
ClassHKTypeHybridLength947 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS08055Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length947 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 947 aa (76.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa947 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
271-472 aa · 202 aa · 21.3% of protein
Raw token
SBP_bac_3:271:2.84e-18:472:215:2243 HisKA#3
567-632 aa · 66 aa · 7.0% of protein
Raw token
HisKA:567:4.12e-17:632:66:644 HATPase_c#4
681-798 aa · 118 aa · 12.5% of protein
Raw token
HATPase_c:681:1.28e-26:798:119:1095 Response_reg#5
819-935 aa · 117 aa · 12.4% of protein
Raw token
Response_reg:819:6.84e-30:935:117:111- Raw architecture: SBP_bac_3:33:5.4e-27:249:230:224#SBP_bac_3:271:2.84e-18:472:215:224#HisKA:567:4.12e-17:632:66:64#HATPase_c:681:1.28e-26:798:119:109#Response_reg:819:6.84e-30:935:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000010.1::G00017
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span614-5408Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_01644RefSeq proteinWP_242853604.1
Context group ID
GCF_001406295::NZ_CYYA01000010.1::G00017Context members
ARA08_RS08055ARA08_RS08060
Partner locus tags
ARA08_RS08055ARA08_RS08060
Partner old locus tags
ERS852448_01644ERS852448_01645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242853604.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS08055Primary locus identifier stored in the genes table.
Old locus tagERS852448_01644Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000010.1Sequence record reported by the local genomic context database.
Genomic interval614-3 457 nt2 844 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span614-5 408 ntGCF_001406295::NZ_CYYA01000010.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000010.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000010.1All displayed genes belong to this local TCS context.
Neighborhood span614-5 408 nt4 795 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
614 nt5 408 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS08055GCF_001406295#ARA08_RS08055
HKHybridCurrent focus
614-3 457 nt · Forward (+)
ARA08_RS08060GCF_001406295#ARA08_RS08060
HKHybrid
3 789-5 408 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS08055The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0332811
Simplified PFAM architecture for HKOC_0332811
PFAM domain coverage: 498 / 947 aa (52.6%)
1 aa947 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[41-239] | HisKA[567-632] | HATPase_c[682-797] | Response_reg[819-935]
- Domain count: 4
- Matched identifier: HKOC_0332811
- Positioned domains: SBP_bac_3 41-239 ; HisKA 567-632 ; HATPase_c 682-797 ; Response_reg 819-935
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS08055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key