1 Response_reg#1
6-117 aa · 112 aa · 27.7% of protein
Raw token
Response_reg:6:6e-26:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS07315
Response regulator, unclassified
Eubacterium ramulus · GCF_001406295
ClassRRTypeunclassifiedLength404 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS07315Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length404 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 404 aa (27.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa404 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:6e-26:117:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000008.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76464-79485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_01495RefSeq proteinWP_055290188.1
Context group ID
GCF_001406295::NZ_CYYA01000008.1::G00016Context members
ARA08_RS07315ARA08_RS07320
Partner locus tags
ARA08_RS07315ARA08_RS07320
Partner old locus tags
ERS852448_01495ERS852448_01496
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055290188.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TG27Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TG27_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS07315Primary locus identifier stored in the genes table.
Old locus tagERS852448_01495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000008.1Sequence record reported by the local genomic context database.
Genomic interval76 464-77 678 nt1 215 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 464-79 485 ntGCF_001406295::NZ_CYYA01000008.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000008.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000008.1All displayed genes belong to this local TCS context.
Neighborhood span76 464-79 485 nt3 022 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 464 nt79 485 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS07315GCF_001406295#ARA08_RS07315
RRunclassifiedCurrent focus
76 464-77 678 nt · Reverse (-)
ARA08_RS07320GCF_001406295#ARA08_RS07320
HKClassic
77 653-79 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS07315The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0379593
Simplified PFAM architecture for RROC_0379593
PFAM domain coverage: 113 / 404 aa (28.0%)
1 aa404 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-117]
- Domain count: 1
- Matched identifier: RROC_0379593
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key