1 Response_reg#1
8-121 aa · 114 aa · 33.7% of protein
Raw token
Response_reg:8:7.25e-23:121:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS06300
Response regulator, unclassified
Eubacterium ramulus · GCF_001406295
ClassRRTypeunclassifiedLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS06300Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 338 aa (44.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
250-284 aa · 35 aa · 10.4% of protein
Raw token
HTH_AraC:250:0.0000081:284:35:42- Raw architecture: Response_reg:8:7.25e-23:121:114:111#HTH_AraC:250:0.0000081:284:35:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000007.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67649-70410Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_01288RefSeq proteinWP_022036082.1
Context group ID
GCF_001406295::NZ_CYYA01000007.1::G00013Context members
ARA08_RS06295ARA08_RS06300
Partner locus tags
ARA08_RS06295ARA08_RS06300
Partner old locus tags
ERS852448_01287ERS852448_01288
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022036082.1Primary protein accession used for annex mappings.
UniProt accessionA0A173T2R9Primary UniProt accession resolved in the annex database.
UniProt IDA0A173T2R9_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS06300Primary locus identifier stored in the genes table.
Old locus tagERS852448_01288Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000007.1Sequence record reported by the local genomic context database.
Genomic interval69 394-70 410 nt1 017 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 649-70 410 ntGCF_001406295::NZ_CYYA01000007.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000007.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span67 649-70 410 nt2 762 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 649 nt70 410 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS06295GCF_001406295#ARA08_RS06295
HKClassic
67 649-69 397 nt · Reverse (-)
ARA08_RS06300GCF_001406295#ARA08_RS06300
RRunclassifiedCurrent focus
69 394-70 410 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS06300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0503690
Simplified PFAM architecture for RROC_0503690
PFAM domain coverage: 192 / 338 aa (56.8%)
1 aa338 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[8-120] | HTH_18[256-334]
- Domain count: 2
- Matched identifier: RROC_0503690
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; HTH_18 256-334 ; HTH_18 256-334
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS06300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key