1 HisKA#1
345-411 aa · 67 aa · 9.3% of protein
Raw token
HisKA:345:0.0000000000000964:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS05430
Histidine kinase, Hybrid
Eubacterium ramulus · GCF_001406295
ClassHKTypeHybridLength720 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406295#ARA08_RS05430Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length720 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 720 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa720 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
463-576 aa · 114 aa · 15.8% of protein
Raw token
HATPase_c:463:3.58e-26:576:114:1093 Response_reg#3
599-715 aa · 117 aa · 16.3% of protein
Raw token
Response_reg:599:1.08e-30:715:117:111- Raw architecture: HisKA:345:0.0000000000000964:411:67:64#HATPase_c:463:3.58e-26:576:114:109#Response_reg:599:1.08e-30:715:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406295::NZ_CYYA01000006.1::G00012
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span67533-72603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_01106RefSeq proteinWP_055289850.1
Context group ID
GCF_001406295::NZ_CYYA01000006.1::G00012Context members
ARA08_RS05430ARA08_RS05435
Partner locus tags
ARA08_RS05430ARA08_RS05435
Partner old locus tags
ERS852448_01106ERS852448_01107
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055289850.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS05430Primary locus identifier stored in the genes table.
Old locus tagERS852448_01106Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000006.1Sequence record reported by the local genomic context database.
Genomic interval67 533-69 695 nt2 163 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 533-72 603 ntGCF_001406295::NZ_CYYA01000006.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000006.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000006.1All displayed genes belong to this local TCS context.
Neighborhood span67 533-72 603 nt5 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 533 nt72 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA08_RS05430GCF_001406295#ARA08_RS05430
HKHybridCurrent focus
67 533-69 695 nt · Forward (+)
ARA08_RS05435GCF_001406295#ARA08_RS05435
HKHybrid
69 739-72 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS05430The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0732539
Simplified PFAM architecture for HKOC_0732539
PFAM domain coverage: 297 / 720 aa (41.3%)
1 aa720 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[463-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0732539
- Positioned domains: HisKA 345-411 ; HATPase_c 463-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS05430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key