1 PAS_9#1
346-448 aa · 103 aa · 10.5% of protein
Raw token
PAS_9:346:0.00000923:448:110:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS05420
Histidine kinase, Hybrid
Eubacterium ramulus · GCF_001406295
ClassHKTypeHybridLength983 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406295#ARA08_RS05420Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length983 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage520 / 983 aa (52.9%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa983 aa
Domain-by-domain annotation5 items
2 HisKA#2
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:6.16e-20:536:67:643 HATPase_c#3
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:7.87e-33:701:118:1094 Response_reg#4
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:1.48e-19:833:114:1115 Response_reg#5
861-978 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:861:2.25e-32:978:118:111- Raw architecture: PAS_9:346:0.00000923:448:110:102#HisKA:470:6.16e-20:536:67:64#HATPase_c:584:7.87e-33:701:118:109#Response_reg:720:1.48e-19:833:114:111#Response_reg:861:2.25e-32:978:118:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406295::NZ_CYYA01000006.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63645-66596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_01104RefSeq proteinWP_055289952.1
Context group ID
GCF_001406295::NZ_CYYA01000006.1::G00011Context members
ARA08_RS05420
Partner locus tags
ARA08_RS05420
Partner old locus tags
ERS852448_01104
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055289952.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS05420Primary locus identifier stored in the genes table.
Old locus tagERS852448_01104Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000006.1Sequence record reported by the local genomic context database.
Genomic interval63 645-66 596 nt2 952 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 645-66 596 ntGCF_001406295::NZ_CYYA01000006.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000006.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000006.1All displayed genes belong to this local TCS context.
Neighborhood span63 645-66 596 nt2 952 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 645 nt66 596 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA08_RS05420GCF_001406295#ARA08_RS05420
HKHybridCurrent focus
63 645-66 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406295#ARA08_RS05420The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0303906
Simplified PFAM architecture for HKOC_0303906
PFAM domain coverage: 414 / 983 aa (42.1%)
1 aa983 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0303906
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_001406295#ARA08_RS05420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key