1 Response_reg#1
8-121 aa · 114 aa · 43.5% of protein
Raw token
Response_reg:8:3.03e-24:121:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA08_RS00420
Response regulator Spo0A family
Eubacterium ramulus · GCF_001406295
ClassRRTypeSpo0ALength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406295#ARA08_RS00420Stable P2CS identifier used across views.
GenomeGCF_001406295Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 262 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
154-257 aa · 104 aa · 39.7% of protein
Raw token
Spo0A_C:154:7.8e-65:257:104:104- Raw architecture: Response_reg:8:3.03e-24:121:115:111#Spo0A_C:154:7.8e-65:257:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406295::NZ_CYYA01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span70347-71135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852448_00088RefSeq proteinWP_021739804.1
Context group ID
GCF_001406295::NZ_CYYA01000001.1::G00001Context members
ARA08_RS00420
Partner locus tags
ARA08_RS00420
Partner old locus tags
ERS852448_00088
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739804.1Primary protein accession used for annex mappings.
UniProt accessionU2R9B6Primary UniProt accession resolved in the annex database.
UniProt IDU2R9B6_EUBRADisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA08_RS00420Primary locus identifier stored in the genes table.
Old locus tagERS852448_00088Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYA01000001.1Sequence record reported by the local genomic context database.
Genomic interval70 347-71 135 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 347-71 135 ntGCF_001406295::NZ_CYYA01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406295::NZ_CYYA01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span70 347-71 135 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 347 nt71 135 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA08_RS00420GCF_001406295#ARA08_RS00420
RRSpo0ACurrent focus
70 347-71 135 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS11040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644347
Simplified PFAM architecture for RROC_0644347
PFAM domain coverage: 219 / 262 aa (83.6%)
1 aa262 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-121] | Spo0A_C[154-257]
- Domain count: 2
- Matched identifier: RROC_0644347
- Positioned domains: Response_reg 7-121 ; Response_reg 7-121 ; Spo0A_C 154-257 ; Spo0A_C 154-257
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS11040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_001406295
Assembly13414_6#75 · Scaffoldhaploid
Genome composition3 307 376 bp · 43,0% GCEubacterium ramulus
Signal transduction countsGenes 68 · HK 34 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key