1 Response_reg#1
9-133 aa · 125 aa · 50.2% of protein
Raw token
Response_reg:9:3.44e-29:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA09_RS02140
Response regulator NarL family
Bifidobacterium adolescentis · GCF_001406215
ClassRRTypeNarLLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406215#ARA09_RS02140Stable P2CS identifier used across views.
GenomeGCF_001406215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 249 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
186-243 aa · 58 aa · 23.3% of protein
Raw token
HTH_LUXR:186:2.26e-23:243:58:58- Raw architecture: Response_reg:9:3.44e-29:133:125:111#HTH_LUXR:186:2.26e-23:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406215::NZ_CZAA01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span463983-467418Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852465_00434RefSeq proteinWP_038444325.1
Context group ID
GCF_001406215::NZ_CZAA01000001.1::G00004Context members
ARA09_RS02135ARA09_RS02140
Partner locus tags
ARA09_RS02135ARA09_RS02140
Partner old locus tags
ERS852465_00433ERS852465_00434
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_038444325.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA09_RS02140Primary locus identifier stored in the genes table.
Old locus tagERS852465_00434Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAA01000001.1Sequence record reported by the local genomic context database.
Genomic interval466 669-467 418 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span463 983-467 418 ntGCF_001406215::NZ_CZAA01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406215::NZ_CZAA01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span463 983-467 418 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
463 983 nt467 418 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA09_RS02135GCF_001406215#ARA09_RS02135
HKClassic
463 983-466 592 nt · Forward (+)
ARA09_RS02140GCF_001406215#ARA09_RS02140
RRNarLCurrent focus
466 669-467 418 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000737885#BADO_RS03250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0732738
Simplified PFAM architecture for RROC_0732738
PFAM domain coverage: 180 / 249 aa (72.3%)
1 aa249 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[188-243]
- Domain count: 2
- Matched identifier: RROC_0732738
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 188-243 ; GerE 188-243
Cluster members and taxonomy
Representative gene: GCF_000737885#BADO_RS03250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_001406215
Assembly13470_2#69 · Scaffoldhaploid
Genome composition2 234 127 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key