1 Response_reg#1
10-121 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:10:1.44e-29:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ989_RS00680
Response regulator OmpR family
Anaerostipes hadrus · GCF_001405715
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405715#AQ989_RS00680Stable P2CS identifier used across views.
GenomeGCF_001405715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 232 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-230 aa · 72 aa · 31.0% of protein
Raw token
Trans_reg_C:159:2.25e-29:230:73:77- Raw architecture: Response_reg:10:1.44e-29:121:113:111#Trans_reg_C:159:2.25e-29:230:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405715::NZ_CYXT01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span123705-124403Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852425_00133RefSeq proteinWP_005333481.1
Context group ID
GCF_001405715::NZ_CYXT01000001.1::G00002Context members
AQ989_RS00680
Partner locus tags
AQ989_RS00680
Partner old locus tags
ERS852425_00133
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333481.1Primary protein accession used for annex mappings.
UniProt accessionA0A4Q1RF23Primary UniProt accession resolved in the annex database.
UniProt IDA0A4Q1RF23_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ989_RS00680Primary locus identifier stored in the genes table.
Old locus tagERS852425_00133Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXT01000001.1Sequence record reported by the local genomic context database.
Genomic interval123 705-124 403 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 705-124 403 ntGCF_001405715::NZ_CYXT01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405715::NZ_CYXT01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span123 705-124 403 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 705 nt124 403 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ989_RS00680GCF_001405715#AQ989_RS00680
RROmpRCurrent focus
123 705-124 403 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003467225#DW918_RS00425Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888324
Simplified PFAM architecture for RROC_0888324
PFAM domain coverage: 183 / 240 aa (76.3%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[18-129] | Trans_reg_C[168-238]
- Domain count: 2
- Matched identifier: RROC_0888324
- Positioned domains: Response_reg 18-129 ; Response_reg 18-129 ; Trans_reg_C 168-238 ; Trans_reg_C 168-238
Cluster members and taxonomy
Representative gene: GCF_003467225#DW918_RS00425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001405715
Assembly13414_6#52 · Scaffoldhaploid
Genome composition3 282 732 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 55 · HK 27 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key