1 Response_reg#1
3-113 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:3:6.21e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB75_RS00330
Response regulator OmpR family
Roseburia faecis · GCF_001405615
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405615#ARB75_RS00330Stable P2CS identifier used across views.
GenomeGCF_001405615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:3.01e-26:221:78:77- Raw architecture: Response_reg:3:6.21e-31:113:111:111#Trans_reg_C:146:3.01e-26:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405615::NZ_CYXV01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69049-70760Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852420_00065RefSeq proteinWP_009322000.1
Context group ID
GCF_001405615::NZ_CYXV01000001.1::G00002Context members
ARB75_RS00325ARB75_RS00330
Partner locus tags
ARB75_RS00325ARB75_RS00330
Partner old locus tags
ERS852420_00064ERS852420_00065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009322000.1Primary protein accession used for annex mappings.
UniProt accessionA0A174I243Primary UniProt accession resolved in the annex database.
UniProt IDA0A174I243_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB75_RS00330Primary locus identifier stored in the genes table.
Old locus tagERS852420_00065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYXV01000001.1Sequence record reported by the local genomic context database.
Genomic interval70 077-70 760 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 049-70 760 ntGCF_001405615::NZ_CYXV01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405615::NZ_CYXV01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYXV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span69 049-70 760 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 049 nt70 760 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB75_RS00325GCF_001405615#ARB75_RS00325
HKClassic
69 049-70 080 nt · Reverse (-)
ARB75_RS00330GCF_001405615#ARB75_RS00330
RROmpRCurrent focus
70 077-70 760 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000174195#ROSEINA2194_RS00815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354716
Simplified PFAM architecture for RROC_1354716
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1354716
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000174195#ROSEINA2194_RS00815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001405615
Assembly13414_6#47 · Scaffoldreference genome · haploid
Genome composition3 567 818 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 100 · HK 42 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key