1 HisKA#1
254-320 aa · 67 aa · 13.9% of protein
Raw token
HisKA:254:0.000000000000664:320:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ993_RS00125
Histidine kinase, Classic
Agathobacter rectalis · GCF_001405295
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405295#AQ993_RS00125Stable P2CS identifier used across views.
GenomeGCF_001405295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 483 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
368-479 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:368:5.05e-28:479:112:109- Raw architecture: HisKA:254:0.000000000000664:320:67:64#HATPase_c:368:5.05e-28:479:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405295::NZ_CZAJ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26877-29042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852497_00022RefSeq proteinWP_055061527.1
Context group ID
GCF_001405295::NZ_CZAJ01000001.1::G00001Context members
AQ993_RS00120AQ993_RS00125
Partner locus tags
AQ993_RS00120AQ993_RS00125
Partner old locus tags
ERS852497_00021ERS852497_00022
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055061527.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WHC5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WHC5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ993_RS00125Primary locus identifier stored in the genes table.
Old locus tagERS852497_00022Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval27 591-29 042 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 877-29 042 ntGCF_001405295::NZ_CZAJ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405295::NZ_CZAJ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span26 877-29 042 nt2 166 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 877 nt29 042 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ993_RS00120GCF_001405295#AQ993_RS00120
RROmpR
26 877-27 569 nt · Forward (+)
AQ993_RS00125GCF_001405295#AQ993_RS00125
HKClassicCurrent focus
27 591-29 042 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405295#AQ993_RS00125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594879
Simplified PFAM architecture for HKOC_1594879
PFAM domain coverage: 179 / 483 aa (37.1%)
1 aa483 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[254-320] | HATPase_c[368-479]
- Domain count: 2
- Matched identifier: HKOC_1594879
- Positioned domains: HisKA 254-320 ; HATPase_c 368-479
Cluster members and taxonomy
Representative gene: GCF_001405295#AQ993_RS00125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001405295
Assembly14207_7#7 · Scaffoldhaploid
Genome composition3 056 970 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 60 · HK 27 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key