1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:2.08e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA45_RS12630
Response regulator OmpR family
Anaerostipes hadrus · GCF_001404955
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404955#ARA45_RS12630Stable P2CS identifier used across views.
GenomeGCF_001404955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:2.04e-19:223:76:77- Raw architecture: Response_reg:3:2.08e-28:115:113:111#Trans_reg_C:149:2.04e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404955::NZ_CYZM01000011.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63596-65568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852475_02582RefSeq proteinWP_015559973.1
Context group ID
GCF_001404955::NZ_CYZM01000011.1::G00026Context members
ARA45_RS12625ARA45_RS12630
Partner locus tags
ARA45_RS12625ARA45_RS12630
Partner old locus tags
ERS852475_02581ERS852475_02582
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015559973.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA45_RS12630Primary locus identifier stored in the genes table.
Old locus tagERS852475_02582Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZM01000011.1Sequence record reported by the local genomic context database.
Genomic interval64 882-65 568 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 596-65 568 ntGCF_001404955::NZ_CYZM01000011.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404955::NZ_CYZM01000011.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZM01000011.1All displayed genes belong to this local TCS context.
Neighborhood span63 596-65 568 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 596 nt65 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA45_RS12625GCF_001404955#ARA45_RS12625
HKClassic
63 596-64 888 nt · Reverse (-)
ARA45_RS12630GCF_001404955#ARA45_RS12630
RROmpRCurrent focus
64 882-65 568 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036688765#LFB15_RS18975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1231714
Simplified PFAM architecture for RROC_1231714
PFAM domain coverage: 187 / 230 aa (81.3%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-117] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1231714
- Positioned domains: Response_reg 5-117 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_036688765#LFB15_RS18975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001404955
Assembly13470_2#79 · Scaffoldhaploid
Genome composition2 956 176 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key