1 Response_reg#1
5-112 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:5:3.47e-35:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA45_RS07580
Response regulator OmpR family
Anaerostipes hadrus · GCF_001404955
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404955#ARA45_RS07580Stable P2CS identifier used across views.
GenomeGCF_001404955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:7.37e-26:219:76:77- Raw architecture: Response_reg:5:3.47e-35:112:110:111#Trans_reg_C:146:7.37e-26:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404955::NZ_CYZM01000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span193568-195597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852475_01541RefSeq proteinWP_172676100.1
Context group ID
GCF_001404955::NZ_CYZM01000004.1::G00016Context members
ARA45_RS07575ARA45_RS07580
Partner locus tags
ARA45_RS07575ARA45_RS07580
Partner old locus tags
ERS852475_01540ERS852475_01541
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172676100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA45_RS07580Primary locus identifier stored in the genes table.
Old locus tagERS852475_01541Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZM01000004.1Sequence record reported by the local genomic context database.
Genomic interval194 935-195 597 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span193 568-195 597 ntGCF_001404955::NZ_CYZM01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404955::NZ_CYZM01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZM01000004.1All displayed genes belong to this local TCS context.
Neighborhood span193 568-195 597 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 568 nt195 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA45_RS07575GCF_001404955#ARA45_RS07575
HKClassic
193 568-194 944 nt · Reverse (-)
ARA45_RS07580GCF_001404955#ARA45_RS07580
RROmpRCurrent focus
194 935-195 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404955#ARA45_RS07580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1727199
Simplified PFAM architecture for RROC_1727199
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1727199
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_001404955#ARA45_RS07580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001404955
Assembly13470_2#79 · Scaffoldhaploid
Genome composition2 956 176 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key