1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:3.1e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA45_RS05660
Response regulator OmpR family
Anaerostipes hadrus · GCF_001404955
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404955#ARA45_RS05660Stable P2CS identifier used across views.
GenomeGCF_001404955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:155:6.96e-33:231:77:77- Raw architecture: Response_reg:6:3.1e-35:115:111:111#Trans_reg_C:155:6.96e-33:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404955::NZ_CYZM01000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span166401-169233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852475_01145RefSeq proteinWP_055232015.1
Context group ID
GCF_001404955::NZ_CYZM01000003.1::G00013Context members
ARA45_RS05655ARA45_RS05660
Partner locus tags
ARA45_RS05655ARA45_RS05660
Partner old locus tags
ERS852475_01144ERS852475_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055232015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA45_RS05660Primary locus identifier stored in the genes table.
Old locus tagERS852475_01145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZM01000003.1Sequence record reported by the local genomic context database.
Genomic interval168 526-169 233 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span166 401-169 233 ntGCF_001404955::NZ_CYZM01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404955::NZ_CYZM01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span166 401-169 233 nt2 833 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
166 401 nt169 233 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA45_RS05655GCF_001404955#ARA45_RS05655
HKClassic
166 401-168 554 nt · Reverse (-)
ARA45_RS05660GCF_001404955#ARA45_RS05660
RROmpRCurrent focus
168 526-169 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404955#ARA45_RS05660The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1020286
Simplified PFAM architecture for RROC_1020286
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1020286
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_001404955#ARA45_RS05660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001404955
Assembly13470_2#79 · Scaffoldhaploid
Genome composition2 956 176 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key