1 Response_reg#1
6-118 aa · 113 aa · 55.7% of protein
Raw token
Response_reg:6:8.61e-33:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA45_RS05165
Response regulator NarL family
Anaerostipes hadrus · GCF_001404955
ClassRRTypeNarLLength203 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404955#ARA45_RS05165Stable P2CS identifier used across views.
GenomeGCF_001404955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length203 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 203 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa203 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
143-196 aa · 54 aa · 26.6% of protein
Raw token
HTH_LUXR:143:0.00000000000464:196:54:58- Raw architecture: Response_reg:6:8.61e-33:118:114:111#HTH_LUXR:143:0.00000000000464:196:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404955::NZ_CYZM01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61614-64636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852475_01044RefSeq proteinWP_242852460.1
Context group ID
GCF_001404955::NZ_CYZM01000003.1::G00010Context members
ARA45_RS05165ARA45_RS05170
Partner locus tags
ARA45_RS05165ARA45_RS05170
Partner old locus tags
ERS852475_01044ERS852475_01045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242852460.1Primary protein accession used for annex mappings.
UniProt accessionA0A173UCW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173UCW8_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA45_RS05165Primary locus identifier stored in the genes table.
Old locus tagERS852475_01044Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZM01000003.1Sequence record reported by the local genomic context database.
Genomic interval61 614-62 225 nt612 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 614-64 636 ntGCF_001404955::NZ_CYZM01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404955::NZ_CYZM01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span61 614-64 636 nt3 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 614 nt64 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA45_RS05165GCF_001404955#ARA45_RS05165
RRNarLCurrent focus
61 614-62 225 nt · Reverse (-)
ARA45_RS05170GCF_001404955#ARA45_RS05170
HKUnorthodox
62 222-64 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404955#ARA45_RS05165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2108409
Simplified PFAM architecture for RROC_2108409
PFAM domain coverage: 164 / 203 aa (80.8%)
1 aa203 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[145-196]
- Domain count: 2
- Matched identifier: RROC_2108409
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 145-196 ; GerE 145-196
Cluster members and taxonomy
Representative gene: GCF_001404955#ARA45_RS05165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001404955
Assembly13470_2#79 · Scaffoldhaploid
Genome composition2 956 176 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key