1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.000000222:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA45_RS04920
Histidine kinase, Classic
Anaerostipes hadrus · GCF_001404955
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404955#ARA45_RS04920Stable P2CS identifier used across views.
GenomeGCF_001404955Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage210 / 439 aa (47.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000462:296:65:643 HATPase_c#3
342-418 aa · 77 aa · 17.5% of protein
Raw token
HATPase_c:342:0.0000123:418:89:109- Raw architecture: HAMP:144:0.000000222:211:68:69#HisKA:232:0.00000462:296:65:64#HATPase_c:342:0.0000123:418:89:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404955::NZ_CYZM01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11671-13640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852475_00994RefSeq proteinWP_055231914.1
Context group ID
GCF_001404955::NZ_CYZM01000003.1::G00009Context members
ARA45_RS04920ARA45_RS04925
Partner locus tags
ARA45_RS04920ARA45_RS04925
Partner old locus tags
ERS852475_00994ERS852475_00995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055231914.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA45_RS04920Primary locus identifier stored in the genes table.
Old locus tagERS852475_00994Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZM01000003.1Sequence record reported by the local genomic context database.
Genomic interval11 671-12 990 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 671-13 640 ntGCF_001404955::NZ_CYZM01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404955::NZ_CYZM01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span11 671-13 640 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 671 nt13 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA45_RS04920GCF_001404955#ARA45_RS04920
HKClassicCurrent focus
11 671-12 990 nt · Reverse (-)
ARA45_RS04925GCF_001404955#ARA45_RS04925
RROmpR
12 987-13 640 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404955#ARA45_RS04920The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2083324
Simplified PFAM architecture for HKOC_2083324
PFAM domain coverage: 142 / 439 aa (32.3%)
1 aa439 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-419]
- Domain count: 2
- Matched identifier: HKOC_2083324
- Positioned domains: HisKA 233-296 ; HATPase_c 342-419
Cluster members and taxonomy
Representative gene: GCF_001404955#ARA45_RS04920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_001404955
Assembly13470_2#79 · Scaffoldhaploid
Genome composition2 956 176 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 52 · HK 25 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key