1 HAMP#1
175-242 aa · 68 aa · 14.5% of protein
Raw token
HAMP:175:0.0000000000114:242:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS09830
Histidine kinase, Classic
Blautia obeum · GCF_001404775
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS09830Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 470 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-310 aa · 64 aa · 13.6% of protein
Raw token
HisKA:247:0.00000000000000235:310:64:643 HATPase_c#3
358-470 aa · 113 aa · 24.0% of protein
Raw token
HATPase_c:358:3.37e-28:470:113:109- Raw architecture: HAMP:175:0.0000000000114:242:68:69#HisKA:247:0.00000000000000235:310:64:64#HATPase_c:358:3.37e-28:470:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000014.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76522-78632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01996RefSeq proteinWP_055059967.1
Context group ID
GCF_001404775::NZ_CZBP01000014.1::G00031Context members
ARA22_RS09830ARA22_RS09835
Partner locus tags
ARA22_RS09830ARA22_RS09835
Partner old locus tags
ERS852569_01996ERS852569_01997
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059967.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TMF9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TMF9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS09830Primary locus identifier stored in the genes table.
Old locus tagERS852569_01996Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000014.1Sequence record reported by the local genomic context database.
Genomic interval76 522-77 934 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 522-78 632 ntGCF_001404775::NZ_CZBP01000014.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000014.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000014.1All displayed genes belong to this local TCS context.
Neighborhood span76 522-78 632 nt2 111 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 522 nt78 632 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS09830GCF_001404775#ARA22_RS09830
HKClassicCurrent focus
76 522-77 934 nt · Reverse (-)
ARA22_RS09835GCF_001404775#ARA22_RS09835
RROmpR
77 931-78 632 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS09830The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1718137
Simplified PFAM architecture for HKOC_1718137
PFAM domain coverage: 225 / 470 aa (47.9%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[192-241] | HisKA[247-310] | HATPase_c[359-469]
- Domain count: 3
- Matched identifier: HKOC_1718137
- Positioned domains: HAMP 192-241 ; HisKA 247-310 ; HATPase_c 359-469
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS09830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key