1 HAMP#1
289-362 aa · 74 aa · 12.4% of protein
Raw token
HAMP:289:0.0000000000478:362:75:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS09765
Histidine kinase, Classic
Blautia obeum · GCF_001404775
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS09765Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 595 aa (43.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 His_kinase#2
379-457 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:379:4.22e-33:457:79:803 HATPase_c#3
477-581 aa · 105 aa · 17.6% of protein
Raw token
HATPase_c:477:0.000000000000228:581:109:109- Raw architecture: HAMP:289:0.0000000000478:362:75:69#His_kinase:379:4.22e-33:457:79:80#HATPase_c:477:0.000000000000228:581:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000014.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58761-62100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01982RefSeq proteinWP_055059962.1
Context group ID
GCF_001404775::NZ_CZBP01000014.1::G00030Context members
ARA22_RS09765ARA22_RS09770
Partner locus tags
ARA22_RS09765ARA22_RS09770
Partner old locus tags
ERS852569_01982ERS852569_01983
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059962.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TLM2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TLM2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS09765Primary locus identifier stored in the genes table.
Old locus tagERS852569_01982Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000014.1Sequence record reported by the local genomic context database.
Genomic interval58 761-60 548 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 761-62 100 ntGCF_001404775::NZ_CZBP01000014.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000014.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000014.1All displayed genes belong to this local TCS context.
Neighborhood span58 761-62 100 nt3 340 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 761 nt62 100 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS09765GCF_001404775#ARA22_RS09765
HKClassicCurrent focus
58 761-60 548 nt · Forward (+)
ARA22_RS09770GCF_001404775#ARA22_RS09770
RRunclassified
60 541-62 100 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS09765The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1080449
Simplified PFAM architecture for HKOC_1080449
PFAM domain coverage: 182 / 595 aa (30.6%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[379-455] | HATPase_c[476-580]
- Domain count: 2
- Matched identifier: HKOC_1080449
- Positioned domains: His_kinase 379-455 ; HATPase_c 476-580
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS09765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key