1 Response_reg#1
4-117 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:4:1.3e-24:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS09545
Response regulator, unclassified
Blautia obeum · GCF_001404775
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS09545Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 534 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-478 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:436:0.0000000316:478:43:423 HTH_AraC#3
490-527 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:490:0.000000000795:527:38:42- Raw architecture: Response_reg:4:1.3e-24:117:114:111#HTH_AraC:436:0.0000000316:478:43:42#HTH_AraC:490:0.000000000795:527:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000014.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2496-5919Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01938RefSeq proteinWP_025581244.1
Context group ID
GCF_001404775::NZ_CZBP01000014.1::G00029Context members
ARA22_RS09545ARA22_RS09550
Partner locus tags
ARA22_RS09545ARA22_RS09550
Partner old locus tags
ERS852569_01938ERS852569_01939
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025581244.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TTA8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TTA8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS09545Primary locus identifier stored in the genes table.
Old locus tagERS852569_01938Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000014.1Sequence record reported by the local genomic context database.
Genomic interval2 496-4 100 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 496-5 919 ntGCF_001404775::NZ_CZBP01000014.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000014.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000014.1All displayed genes belong to this local TCS context.
Neighborhood span2 496-5 919 nt3 424 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 496 nt5 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS09545GCF_001404775#ARA22_RS09545
RRunclassifiedCurrent focus
2 496-4 100 nt · Reverse (-)
ARA22_RS09550GCF_001404775#ARA22_RS09550
HKClassic
4 075-5 919 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0121775Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103033
Simplified PFAM architecture for RROC_0103033
PFAM domain coverage: 193 / 534 aa (36.1%)
1 aa534 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[436-478] | HTH_AraC[491-527]
- Domain count: 3
- Matched identifier: RROC_0103033
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_AraC 436-478 ; HTH_AraC 436-478 ; HTH_AraC 491-527 ; HTH_AraC 491-527
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0121775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key