1 HisKA#1
345-410 aa · 66 aa · 9.1% of protein
Raw token
HisKA:345:0.000000000000125:410:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS08445
Histidine kinase, Hybrid
Blautia obeum · GCF_001404775
ClassHKTypeHybridLength727 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS08445Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length727 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 727 aa (41.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa727 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
458-576 aa · 119 aa · 16.4% of protein
Raw token
HATPase_c:458:1.04e-27:576:119:1093 Response_reg#3
599-716 aa · 118 aa · 16.2% of protein
Raw token
Response_reg:599:3.3e-27:716:118:111- Raw architecture: HisKA:345:0.000000000000125:410:66:64#HATPase_c:458:1.04e-27:576:119:109#Response_reg:599:3.3e-27:716:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000011.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span111055-113238Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01712RefSeq proteinWP_025580640.1
Context group ID
GCF_001404775::NZ_CZBP01000011.1::G00024Context members
ARA22_RS08445
Partner locus tags
ARA22_RS08445
Partner old locus tags
ERS852569_01712
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025580640.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS08445Primary locus identifier stored in the genes table.
Old locus tagERS852569_01712Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000011.1Sequence record reported by the local genomic context database.
Genomic interval111 055-113 238 nt2 184 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span111 055-113 238 ntGCF_001404775::NZ_CZBP01000011.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000011.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000011.1All displayed genes belong to this local TCS context.
Neighborhood span111 055-113 238 nt2 184 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 055 nt113 238 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS08445GCF_001404775#ARA22_RS08445
HKHybridCurrent focus
111 055-113 238 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0117950Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0719113
Simplified PFAM architecture for HKOC_0719113
PFAM domain coverage: 300 / 727 aa (41.3%)
1 aa727 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-410] | HATPase_c[459-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0719113
- Positioned domains: HisKA 345-410 ; HATPase_c 459-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0117950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key