1 PAS_3#1
360-426 aa · 67 aa · 6.8% of protein
Raw token
PAS_3:360:0.0000021:426:71:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS08435
Histidine kinase, Hybrid
Blautia obeum · GCF_001404775
ClassHKTypeHybridLength982 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS08435Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length982 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage484 / 982 aa (49.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa982 aa
Domain-by-domain annotation5 items
2 HisKA#2
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:7.39e-20:536:67:643 HATPase_c#3
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:6.66e-31:701:118:1094 Response_reg#4
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:2.41e-19:833:114:1115 Response_reg#5
861-978 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:861:1.3e-31:978:118:111- Raw architecture: PAS_3:360:0.0000021:426:71:89#HisKA:470:7.39e-20:536:67:64#HATPase_c:584:6.66e-31:701:118:109#Response_reg:720:2.41e-19:833:114:111#Response_reg:861:1.3e-31:978:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000011.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span106251-109199Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01710RefSeq proteinWP_055059871.1
Context group ID
GCF_001404775::NZ_CZBP01000011.1::G00023Context members
ARA22_RS08435
Partner locus tags
ARA22_RS08435
Partner old locus tags
ERS852569_01710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059871.1Primary protein accession used for annex mappings.
UniProt accessionA0A174T2N6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174T2N6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS08435Primary locus identifier stored in the genes table.
Old locus tagERS852569_01710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000011.1Sequence record reported by the local genomic context database.
Genomic interval106 251-109 199 nt2 949 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span106 251-109 199 ntGCF_001404775::NZ_CZBP01000011.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000011.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000011.1All displayed genes belong to this local TCS context.
Neighborhood span106 251-109 199 nt2 949 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
106 251 nt109 199 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS08435GCF_001404775#ARA22_RS08435
HKHybridCurrent focus
106 251-109 199 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS08435The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0304933
Simplified PFAM architecture for HKOC_0304933
PFAM domain coverage: 414 / 982 aa (42.2%)
1 aa982 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0304933
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS08435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key