1 dCache_1#1
167-272 aa · 106 aa · 17.8% of protein
Raw token
dCache_1:167:0.0000304:272:106:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS07985
Histidine kinase, Classic
Blautia obeum · GCF_001404775
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS07985Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage354 / 594 aa (59.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
303-370 aa · 68 aa · 11.4% of protein
Raw token
HAMP:303:0.0000000000841:370:69:693 His_kinase#3
386-465 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:386:2.09e-28:465:80:804 HATPase_c#4
483-582 aa · 100 aa · 16.8% of protein
Raw token
HATPase_c:483:0.0000000102:582:109:109- Raw architecture: dCache_1:167:0.0000304:272:106:195#HAMP:303:0.0000000000841:370:69:69#His_kinase:386:2.09e-28:465:80:80#HATPase_c:483:0.0000000102:582:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000011.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5392-8391Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01619RefSeq proteinWP_008706711.1
Context group ID
GCF_001404775::NZ_CZBP01000011.1::G00022Context members
ARA22_RS07985ARA22_RS07990
Partner locus tags
ARA22_RS07985ARA22_RS07990
Partner old locus tags
ERS852569_01619ERS852569_01620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008706711.1Primary protein accession used for annex mappings.
UniProt accessionA0A564WSF6Primary UniProt accession resolved in the annex database.
UniProt IDA0A564WSF6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS07985Primary locus identifier stored in the genes table.
Old locus tagERS852569_01619Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000011.1Sequence record reported by the local genomic context database.
Genomic interval5 392-7 176 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 392-8 391 ntGCF_001404775::NZ_CZBP01000011.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000011.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000011.1All displayed genes belong to this local TCS context.
Neighborhood span5 392-8 391 nt3 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 392 nt8 391 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS07985GCF_001404775#ARA22_RS07985
HKClassicCurrent focus
5 392-7 176 nt · Forward (+)
ARA22_RS07990GCF_001404775#ARA22_RS07990
RRunclassified
7 213-8 391 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS07985The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1087660
Simplified PFAM architecture for HKOC_1087660
PFAM domain coverage: 223 / 594 aa (37.5%)
1 aa594 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[324-370] | His_kinase[387-463] | HATPase_c[484-582]
- Domain count: 3
- Matched identifier: HKOC_1087660
- Positioned domains: HAMP 324-370 ; His_kinase 387-463 ; HATPase_c 484-582
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS07985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key