1 HisKA#1
235-296 aa · 62 aa · 13.7% of protein
Raw token
HisKA:235:0.0000000000000414:296:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS06200
Histidine kinase, Classic
Blautia obeum · GCF_001404775
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS06200Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
345-453 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:345:6.63e-21:453:109:109- Raw architecture: HisKA:235:0.0000000000000414:296:62:64#HATPase_c:345:6.63e-21:453:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000008.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9825-11842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01260RefSeq proteinWP_055059697.1
Context group ID
GCF_001404775::NZ_CZBP01000008.1::G00016Context members
ARA22_RS06200ARA22_RS06205
Partner locus tags
ARA22_RS06200ARA22_RS06205
Partner old locus tags
ERS852569_01260ERS852569_01261
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059697.1Primary protein accession used for annex mappings.
UniProt accessionA0A174SC38Primary UniProt accession resolved in the annex database.
UniProt IDA0A174SC38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS06200Primary locus identifier stored in the genes table.
Old locus tagERS852569_01260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000008.1Sequence record reported by the local genomic context database.
Genomic interval9 825-11 189 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 825-11 842 ntGCF_001404775::NZ_CZBP01000008.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000008.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000008.1All displayed genes belong to this local TCS context.
Neighborhood span9 825-11 842 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 825 nt11 842 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS06200GCF_001404775#ARA22_RS06200
HKClassicCurrent focus
9 825-11 189 nt · Reverse (-)
ARA22_RS06205GCF_001404775#ARA22_RS06205
RROmpR
11 180-11 842 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404955#ARA45_RS07575Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1860012
Simplified PFAM architecture for HKOC_1860012
PFAM domain coverage: 171 / 458 aa (37.3%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1860012
- Positioned domains: HisKA 235-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_001404955#ARA45_RS07575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key