1 Response_reg#1
4-87 aa · 84 aa · 34.3% of protein
Raw token
Response_reg:4:0.00000000164:87:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS06075
Response regulator LytTR family
Blautia obeum · GCF_001404775
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS06075Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 245 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-234 aa · 96 aa · 39.2% of protein
Raw token
LytTR:139:0.000000000511:234:101:98- Raw architecture: Response_reg:4:0.00000000164:87:85:111#LytTR:139:0.000000000511:234:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000007.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span122550-123287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01233RefSeq proteinWP_055059676.1
Context group ID
GCF_001404775::NZ_CZBP01000007.1::G00015Context members
ARA22_RS06075
Partner locus tags
ARA22_RS06075
Partner old locus tags
ERS852569_01233
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059676.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7HYP1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7HYP1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS06075Primary locus identifier stored in the genes table.
Old locus tagERS852569_01233Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000007.1Sequence record reported by the local genomic context database.
Genomic interval122 550-123 287 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 550-123 287 ntGCF_001404775::NZ_CZBP01000007.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000007.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000007.1All displayed genes belong to this local TCS context.
Neighborhood span122 550-123 287 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 550 nt123 287 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS06075GCF_001404775#ARA22_RS06075
RRLytTRCurrent focus
122 550-123 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS06075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0791379
Simplified PFAM architecture for RROC_0791379
PFAM domain coverage: 205 / 245 aa (83.7%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[140-234]
- Domain count: 2
- Matched identifier: RROC_0791379
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 140-234 ; LytTR 140-234
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS06075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key