1 Response_reg#1
5-113 aa · 109 aa · 47.0% of protein
Raw token
Response_reg:5:9.25e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS05555
Response regulator OmpR family
Blautia obeum · GCF_001404775
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS05555Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:155:9.65e-29:231:77:77- Raw architecture: Response_reg:5:9.25e-40:113:111:111#Trans_reg_C:155:9.65e-29:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000007.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3570-4274Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01131RefSeq proteinWP_008703658.1
Context group ID
GCF_001404775::NZ_CZBP01000007.1::G00014Context members
ARA22_RS05555
Partner locus tags
ARA22_RS05555
Partner old locus tags
ERS852569_01131
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008703658.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS05555Primary locus identifier stored in the genes table.
Old locus tagERS852569_01131Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000007.1Sequence record reported by the local genomic context database.
Genomic interval3 570-4 274 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 570-4 274 ntGCF_001404775::NZ_CZBP01000007.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000007.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000007.1All displayed genes belong to this local TCS context.
Neighborhood span3 570-4 274 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 570 nt4 274 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS05555GCF_001404775#ARA22_RS05555
RROmpRCurrent focus
3 570-4 274 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014297245#H8Z82_RS10055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1060398
Simplified PFAM architecture for RROC_1060398
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[157-233]
- Domain count: 2
- Matched identifier: RROC_1060398
- Positioned domains: Response_reg 7-115 ; Trans_reg_C 157-233
Cluster members and taxonomy
Representative gene: GCF_014297245#H8Z82_RS10055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key