1 HisKA#1
29-95 aa · 67 aa · 27.7% of protein
Raw token
HisKA:29:0.00000000000000509:95:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS05540
Histidine kinase, Classic
Blautia obeum · GCF_001404775
ClassHKTypeClassicLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS05540Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 242 aa (69.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
142-242 aa · 101 aa · 41.7% of protein
Raw token
HATPase_c:142:7.61e-22:242:102:109- Raw architecture: HisKA:29:0.00000000000000509:95:67:64#HATPase_c:142:7.61e-22:242:102:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000007.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span142-870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_01128RefSeq proteinWP_172679299.1
Context group ID
GCF_001404775::NZ_CZBP01000007.1::G00013Context members
ARA22_RS05540
Partner locus tags
ARA22_RS05540
Partner old locus tags
ERS852569_01128
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172679299.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS05540Primary locus identifier stored in the genes table.
Old locus tagERS852569_01128Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000007.1Sequence record reported by the local genomic context database.
Genomic interval142-870 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142-870 ntGCF_001404775::NZ_CZBP01000007.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000007.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000007.1All displayed genes belong to this local TCS context.
Neighborhood span142-870 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 nt870 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS05540GCF_001404775#ARA22_RS05540
HKClassicCurrent focus
142-870 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS05540The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2922026
Simplified PFAM architecture for HKOC_2922026
PFAM domain coverage: 166 / 242 aa (68.6%)
1 aa242 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[29-95] | HATPase_c[143-241]
- Domain count: 2
- Matched identifier: HKOC_2922026
- Positioned domains: HisKA 29-95 ; HATPase_c 143-241
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS05540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key