1 Response_reg#1
4-114 aa · 111 aa · 20.9% of protein
Raw token
Response_reg:4:2.94e-26:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS02040
Response regulator, unclassified
Blautia obeum · GCF_001404775
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404775#ARA22_RS02040Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 531 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
437-478 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:437:0.00000000229:478:42:423 HTH_AraC#3
491-527 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:491:0.0000000000412:527:37:42- Raw architecture: Response_reg:4:2.94e-26:114:111:111#HTH_AraC:437:0.00000000229:478:42:42#HTH_AraC:491:0.0000000000412:527:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404775::NZ_CZBP01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span178794-181897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_00417RefSeq proteinWP_055059353.1
Context group ID
GCF_001404775::NZ_CZBP01000002.1::G00005Context members
ARA22_RS02035ARA22_RS02040
Partner locus tags
ARA22_RS02035ARA22_RS02040
Partner old locus tags
ERS852569_00416ERS852569_00417
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059353.1Primary protein accession used for annex mappings.
UniProt accessionA0A174Q4Z5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174Q4Z5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS02040Primary locus identifier stored in the genes table.
Old locus tagERS852569_00417Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000002.1Sequence record reported by the local genomic context database.
Genomic interval180 302-181 897 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span178 794-181 897 ntGCF_001404775::NZ_CZBP01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000002.1All displayed genes belong to this local TCS context.
Neighborhood span178 794-181 897 nt3 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 794 nt181 897 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA22_RS02035GCF_001404775#ARA22_RS02035
HKClassic
178 794-180 275 nt · Forward (+)
ARA22_RS02040GCF_001404775#ARA22_RS02040
RRunclassifiedCurrent focus
180 302-181 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS02040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109771
Simplified PFAM architecture for RROC_0109771
PFAM domain coverage: 281 / 531 aa (52.9%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-114] | GGDEF_2[205-295] | HTH_18[451-529]
- Domain count: 3
- Matched identifier: RROC_0109771
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GGDEF_2 205-295 ; GGDEF_2 205-295 ; HTH_18 451-529 ; HTH_18 451-529
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS02040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key