1 Response_reg#1
4-108 aa · 105 aa · 44.9% of protein
Raw token
Response_reg:4:1.9e-19:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA22_RS01810
Response regulator LytTR family
Blautia obeum · GCF_001404775
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404775#ARA22_RS01810Stable P2CS identifier used across views.
GenomeGCF_001404775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 234 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.9% of protein
Raw token
LytTR:137:8.89e-22:227:97:98- Raw architecture: Response_reg:4:1.9e-19:108:108:111#LytTR:137:8.89e-22:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404775::NZ_CZBP01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span128353-129057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852569_00371RefSeq proteinWP_055059335.1
Context group ID
GCF_001404775::NZ_CZBP01000002.1::G00004Context members
ARA22_RS01810
Partner locus tags
ARA22_RS01810
Partner old locus tags
ERS852569_00371
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059335.1Primary protein accession used for annex mappings.
UniProt accessionA0A174Q2B2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174Q2B2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA22_RS01810Primary locus identifier stored in the genes table.
Old locus tagERS852569_00371Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBP01000002.1Sequence record reported by the local genomic context database.
Genomic interval128 353-129 057 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 353-129 057 ntGCF_001404775::NZ_CZBP01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404775::NZ_CZBP01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBP01000002.1All displayed genes belong to this local TCS context.
Neighborhood span128 353-129 057 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 353 nt129 057 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA22_RS01810GCF_001404775#ARA22_RS01810
RRLytTRCurrent focus
128 353-129 057 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS01810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1051127
Simplified PFAM architecture for RROC_1051127
PFAM domain coverage: 195 / 234 aa (83.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[138-227]
- Domain count: 2
- Matched identifier: RROC_1051127
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 138-227 ; LytTR 138-227
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS01810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404775
Assembly14207_7#80 · Scaffoldhaploid
Genome composition4 295 035 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 112 · HK 53 · RR 56CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key