1 Response_reg#1
3-117 aa · 115 aa · 48.7% of protein
Raw token
Response_reg:3:0.00000000000791:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS21620
Response regulator LytTR family
Blautia wexlerae · GCF_001404735
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS21620Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 236 aa (87.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.6% of protein
Raw token
LytTR:137:8.3e-21:227:97:98- Raw architecture: Response_reg:3:0.00000000000791:117:117:111#LytTR:137:8.3e-21:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000108.1::G00100
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4813-5523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_04366RefSeq proteinWP_055154155.1
Context group ID
GCF_001404735::NZ_CZAW01000108.1::G00100Context members
ARA71_RS21620
Partner locus tags
ARA71_RS21620
Partner old locus tags
ERS852523_04366
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055154155.1Primary protein accession used for annex mappings.
UniProt accessionA0A174UDD2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174UDD2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS21620Primary locus identifier stored in the genes table.
Old locus tagERS852523_04366Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000108.1Sequence record reported by the local genomic context database.
Genomic interval4 813-5 523 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 813-5 523 ntGCF_001404735::NZ_CZAW01000108.1::G00100
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000108.1::G00100Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000108.1All displayed genes belong to this local TCS context.
Neighborhood span4 813-5 523 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 813 nt5 523 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS21620GCF_001404735#ARA71_RS21620
RRLytTRCurrent focus
4 813-5 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS21620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0991711
Simplified PFAM architecture for RROC_0991711
PFAM domain coverage: 203 / 236 aa (86.0%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[139-227]
- Domain count: 2
- Matched identifier: RROC_0991711
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; LytTR 139-227 ; LytTR 139-227
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS21620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key