1 Response_reg#1
4-116 aa · 113 aa · 47.3% of protein
Raw token
Response_reg:4:1.05e-20:116:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS21385
Response regulator LytTR family
Blautia wexlerae · GCF_001404735
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS21385Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 239 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 38.9% of protein
Raw token
LytTR:137:7.08e-19:229:98:98- Raw architecture: Response_reg:4:1.05e-20:116:118:111#LytTR:137:7.08e-19:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000101.1::G00098
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3971-4690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_04316RefSeq proteinWP_055056081.1
Context group ID
GCF_001404735::NZ_CZAW01000101.1::G00098Context members
ARA71_RS21385
Partner locus tags
ARA71_RS21385
Partner old locus tags
ERS852523_04316
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056081.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PGC9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PGC9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS21385Primary locus identifier stored in the genes table.
Old locus tagERS852523_04316Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000101.1Sequence record reported by the local genomic context database.
Genomic interval3 971-4 690 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 971-4 690 ntGCF_001404735::NZ_CZAW01000101.1::G00098
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000101.1::G00098Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000101.1All displayed genes belong to this local TCS context.
Neighborhood span3 971-4 690 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 971 nt4 690 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS21385GCF_001404735#ARA71_RS21385
RRLytTRCurrent focus
3 971-4 690 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS21385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0908908
Simplified PFAM architecture for RROC_0908908
PFAM domain coverage: 202 / 239 aa (84.5%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0908908
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS21385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key