1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:9.27e-21:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS19485
Response regulator LytTR family
Blautia wexlerae · GCF_001404735
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS19485Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 238 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-227 aa · 92 aa · 38.7% of protein
Raw token
LytTR:136:3.14e-17:227:101:98- Raw architecture: Response_reg:3:9.27e-21:108:108:111#LytTR:136:3.14e-17:227:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000071.1::G00080
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12650-13366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_03938RefSeq proteinWP_055153679.1
Context group ID
GCF_001404735::NZ_CZAW01000071.1::G00080Context members
ARA71_RS19485
Partner locus tags
ARA71_RS19485
Partner old locus tags
ERS852523_03938
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055153679.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS19485Primary locus identifier stored in the genes table.
Old locus tagERS852523_03938Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000071.1Sequence record reported by the local genomic context database.
Genomic interval12 650-13 366 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 650-13 366 ntGCF_001404735::NZ_CZAW01000071.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000071.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000071.1All displayed genes belong to this local TCS context.
Neighborhood span12 650-13 366 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 650 nt13 366 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS19485GCF_001404735#ARA71_RS19485
RRLytTRCurrent focus
12 650-13 366 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS19485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936213
Simplified PFAM architecture for RROC_0936213
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[138-227]
- Domain count: 2
- Matched identifier: RROC_0936213
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 138-227 ; LytTR 138-227
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS19485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key