1 Response_reg#1
4-116 aa · 113 aa · 21.9% of protein
Raw token
Response_reg:4:3.48e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS16620
Response regulator, unclassified
Blautia wexlerae · GCF_001404735
ClassRRTypeunclassifiedLength517 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS16620Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length517 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 517 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa517 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-463 aa · 41 aa · 7.9% of protein
Raw token
HTH_AraC:423:0.00000000000202:463:41:423 HTH_AraC#3
477-514 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:477:0.000000263:514:38:42- Raw architecture: Response_reg:4:3.48e-28:116:113:111#HTH_AraC:423:0.00000000000202:463:41:42#HTH_AraC:477:0.000000263:514:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000047.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22524-25903Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_03370RefSeq proteinWP_055153026.1
Context group ID
GCF_001404735::NZ_CZAW01000047.1::G00062Context members
ARA71_RS16620ARA71_RS16625
Partner locus tags
ARA71_RS16620ARA71_RS16625
Partner old locus tags
ERS852523_03370ERS852523_03371
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055153026.1Primary protein accession used for annex mappings.
UniProt accessionA0A174S9D5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174S9D5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS16620Primary locus identifier stored in the genes table.
Old locus tagERS852523_03370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000047.1Sequence record reported by the local genomic context database.
Genomic interval22 524-24 077 nt1 554 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 524-25 903 ntGCF_001404735::NZ_CZAW01000047.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000047.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000047.1All displayed genes belong to this local TCS context.
Neighborhood span22 524-25 903 nt3 380 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 524 nt25 903 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS16620GCF_001404735#ARA71_RS16620
RRunclassifiedCurrent focus
22 524-24 077 nt · Forward (+)
ARA71_RS16625GCF_001404735#ARA71_RS16625
HKClassic
24 077-25 903 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS16620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0131158
Simplified PFAM architecture for RROC_0131158
PFAM domain coverage: 194 / 517 aa (37.5%)
1 aa517 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[423-463] | HTH_AraC[475-514]
- Domain count: 3
- Matched identifier: RROC_0131158
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_AraC 423-463 ; HTH_AraC 423-463 ; HTH_AraC 475-514 ; HTH_AraC 475-514
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS16620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key