1 Response_reg#1
3-114 aa · 112 aa · 21.7% of protein
Raw token
Response_reg:3:1.06e-32:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS13875
Response regulator, unclassified
Blautia wexlerae · GCF_001404735
ClassRRTypeunclassifiedLength515 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404735#ARA71_RS13875Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 515 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
466-500 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:466:0.00000000225:500:35:42- Raw architecture: Response_reg:3:1.06e-32:114:112:111#HTH_AraC:466:0.00000000225:500:35:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404735::NZ_CZAW01000033.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6182-7729Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_02811RefSeq proteinWP_055152426.1
Context group ID
GCF_001404735::NZ_CZAW01000033.1::G00040Context members
ARA71_RS13875
Partner locus tags
ARA71_RS13875
Partner old locus tags
ERS852523_02811
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055152426.1Primary protein accession used for annex mappings.
UniProt accessionA0A174R4P1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174R4P1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS13875Primary locus identifier stored in the genes table.
Old locus tagERS852523_02811Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000033.1Sequence record reported by the local genomic context database.
Genomic interval6 182-7 729 nt1 548 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 182-7 729 ntGCF_001404735::NZ_CZAW01000033.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000033.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000033.1All displayed genes belong to this local TCS context.
Neighborhood span6 182-7 729 nt1 548 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 182 nt7 729 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA71_RS13875GCF_001404735#ARA71_RS13875
RRunclassifiedCurrent focus
6 182-7 729 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS13875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0136288
Simplified PFAM architecture for RROC_0136288
PFAM domain coverage: 188 / 515 aa (36.5%)
1 aa515 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-116] | HTH_18[427-500]
- Domain count: 2
- Matched identifier: RROC_0136288
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; HTH_18 427-500 ; HTH_18 427-500
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS13875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key