1 HAMP#1
92-160 aa · 69 aa · 17.8% of protein
Raw token
HAMP:92:9.68e-16:160:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA71_RS13075
Histidine kinase, Classic
Blautia wexlerae · GCF_001404735
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404735#ARA71_RS13075Stable P2CS identifier used across views.
GenomeGCF_001404735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 387 aa (62.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation3 items
2 HisKA#2
166-228 aa · 63 aa · 16.3% of protein
Raw token
HisKA:166:0.000000000289:228:63:643 HATPase_c#3
274-383 aa · 110 aa · 28.4% of protein
Raw token
HATPase_c:274:3.53e-31:383:111:109- Raw architecture: HAMP:92:9.68e-16:160:69:69#HisKA:166:0.000000000289:228:63:64#HATPase_c:274:3.53e-31:383:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404735::NZ_CZAW01000029.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43323-45159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852523_02654RefSeq proteinWP_055152225.1
Context group ID
GCF_001404735::NZ_CZAW01000029.1::G00035Context members
ARA71_RS13070ARA71_RS13075
Partner locus tags
ARA71_RS13070ARA71_RS13075
Partner old locus tags
ERS852523_02653ERS852523_02654
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055152225.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QLT5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QLT5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA71_RS13075Primary locus identifier stored in the genes table.
Old locus tagERS852523_02654Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAW01000029.1Sequence record reported by the local genomic context database.
Genomic interval43 996-45 159 nt1 164 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 323-45 159 ntGCF_001404735::NZ_CZAW01000029.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404735::NZ_CZAW01000029.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAW01000029.1All displayed genes belong to this local TCS context.
Neighborhood span43 323-45 159 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 323 nt45 159 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA71_RS13070GCF_001404735#ARA71_RS13070
RROmpR
43 323-43 991 nt · Forward (+)
ARA71_RS13075GCF_001404735#ARA71_RS13075
HKClassicCurrent focus
43 996-45 159 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS13075The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550712
Simplified PFAM architecture for HKOC_2550712
PFAM domain coverage: 222 / 387 aa (57.4%)
1 aa387 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[109-160] | HisKA[166-228] | HATPase_c[277-383]
- Domain count: 3
- Matched identifier: HKOC_2550712
- Positioned domains: HAMP 109-160 ; HisKA 166-228 ; HATPase_c 277-383
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS13075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404735
Assembly14207_7#34 · Scaffoldhaploid
Genome composition4 829 031 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 174 · HK 87 · RR 86CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key